Basic Information
VIS ID
TVIS42000963
Fusion event
EBV-chr4:q13.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
10143
Orient
-
Integrated sequence
CCGTGTGAGAACAAGAGTAAAGCTGTGGAACAGATAAAAAATGCCTTTAACAAGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTT| |TTATTAACTACATAGAAGCATACATGACAATTAAAGCCAGGTGATAATTCCATACCCTGGAAGCAGGAGATGGGTGCATTTCACCCCAACCCCCCCTTTC
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
End
61390319/60524601 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/7811854; hsa-mir-1243/Downstream/398018;
Upstream sequence
AAGTGTTTAGGGTGGGTAACATTTTTTTTGAAGGGTGTATATGCCTATTTTGGCCTTAAGGTATTTAGATCTCAGACATAGTGAAGACCATAGAAGACTA
Downstream sequence
TTTATTTATGTATGCATTTACTCATTTAGTAGTTCATTGCAGTTTTACTATCAGTACTGAAATGTAGTTTTAACCCAAATATGAGTATTCTAAAGATTTT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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