Basic Information
VIS ID
TVIS42000965
Fusion event
EBV-LOC105374894 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
10053
Orient
+
Integrated sequence
CAGGACCCTGAAGCCAAAGACCATGTCAATTCTTTGGGTGAAAATCTAAAGACCCTACGGCTCCGCCTGCGCAGGTGCCACAGGTTCCTGCCGTGTGAGA| |ACAAGAGTAAAGCTGTGGAACAGATAAAAAATGCCTTTAACAAGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTA
Host Sequence
Chromosome
chr6
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
4547399/4547165 (Hg38)
End
4547399/4547165 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6B
Target gene
LOC105374894
Nearest miRNA
hsa-mir-4645/Upstream/1693058; hsa-mir-10398/Downstream/601068;
Nearest TSS
ENST00000381078/Upstream/55358; ENST00000380106/Downstream/36706;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/265089, chr6-CpG: 179/Downstream/227732
Upstream sequence
tcatggacctgagtacagtacccagcacatggtagaaattcatcaaaAGGGTTTTGAGTATTAAAATAATAAAGATAGAATTTGGAACAGATCTCCTTAA
Downstream sequence
cagattaaagtttggacaaatctgctgtagataatgagtttgatcttaaaatgcttgatctgtagctgttcttcctgaaaatcattatctagcaaggcca
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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