Basic Information
VIS ID
TVIS42000966
Fusion event
EBV-LOC101928489 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
152475
Orient
-
Integrated sequence
TGAATCATTTTTCCCAGCACCCAGAGCAGCAGTTCTATGAGAAGAGCTATCAGCCAGACATCCATTCGGTGAACCAATTTTCTTACAAAGATGATAAACA| |AGATGCCAGCCAGTGTTAGCAGAATCAGCAGGACGAGCAGCAGGCTTGTCATGCCGCTGAGGAAGGCGCTGTAGGATTTAGTGCACGCATCTTCCGTTGC
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
74405188/73695465 (Hg38)
End
74405188/73695465 (Hg38)
Orient
-
Location type
ncRNA_exonic
Fragile sites / regions
FRA6D
Target gene
LOC101928489
Nearest miRNA
hsa-mir-10398/Upstream/727712; hsa-mir-10524/Downstream/1732942;
Nearest TSS
ENST00000381078/Upstream/41310; ENST00000474094/Downstream/320;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/41182, chr6-CpG: 50/Downstream/412
Upstream sequence
agcatcagagctggtacatagtaagtgctcaataaacattggttgaataaatgaaCTACTGGATTAGATCATAACTGGAgggaagggcactaaaatagga
Downstream sequence
GCATCTTCTTAGGTAATTTTTTTTCAGGGTTCCAAGTAGCAACACCTAACGTCTGCAGTGCGAGTTCTCTTCTTCTTTTTTTTTTTAAGGTGATAAATCA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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