Basic Information
VIS ID
TVIS42000971
Fusion event
EBV-SNAP25-AS1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
36939
Orient
+
Integrated sequence
GCAACACTAACGGTGCCACCAAGGCCTACCCGTCCTACCACTCTGCCACCCACACCACTACTCACGGTACTACAAAGGCCTACCGAACTTCAACCCACAC| |CATCACCACCACGCATGCATCTCCCTGTCTTGCATGTGCCAGACCAATCAATGCACCCTCTTACTCATCAAAGCACCCCAAATGATCCAGATAGTCCAGA
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
10132698/10152050 (Hg38)
End
10132698/10152050 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA20B
Target gene
SNAP25-AS1
Nearest miRNA
hsa-mir-103a-2/Upstream/2780358; hsa-mir-1-1/Downstream/497586;
Nearest TSS
ENST00000382410/Upstream/116726; ENST00000458004/Downstream/21470;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/116784, chr20-CpG: 35/Downstream/20070
Upstream sequence
GGAACATAATGCAATAACATTCTTTGGTCTCAATAAAAATAGTAAAGACTACAgaaggaaaaaaagaaggaaggaaaaaaggaagatagaggaaaaaaga
Downstream sequence
tgtgtgtgtgtgtgtgtgtgtgACagagagagagagagagagagagagagagaaagCTAGATCTCAACCCTACTAGGGAAAGGATCAGATATGCTTACAA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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