Basic Information
VIS ID
TVIS42000973
Fusion event
EBV-chr1:p36.32 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
168792
Orient
-
Integrated sequence
GTTAGAGAAGGAAGAGTAAGGGAAAGGGGGTGTGGGGCAAAGGGTGTAATACTTACTCATCAGTAGGAGTATACAAAGGGCTCCAAGTGGACAGAGAAGG| |TCTCTTCTGAAGATAAAGATGATCAAAATTATAATTATAAGCATGAGAGCAAAGGAATAGAGGACAAGGAGGGCTCCTCCAGTCCAGTCACTCATAACGA
Host Sequence
Chromosome
chr1
Cytoband
p36.32
Reference genome
GRCh37/hg19
Start
2776128/2859563 (Hg38)
End
2776128/2859563 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1519855; hsa-mir-101-1/Downstream/268412;
Nearest TSS
ENST00000473358/Upstream/44565; ENST00000378404/Downstream/103852;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3463, chr1-CpG: 15/Downstream/1029
Upstream sequence
ttacacagtttacctggaaatctccttctttctatggcccttccccagttccactggctgttctccccaaggacccctgtgagataaagtcagaaatggc
Downstream sequence
ttccctagggaccaggactgcctacagggcttttcctactgttgcttctacttttatatgtcagtaaattcacttcagctgtaggtaagattatatcctt
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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