Basic Information
VIS ID
TVIS42000974
Fusion event
EBV-chr1:p36.32 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
109348
Orient
-
Integrated sequence
TAGGACGAGCTATAGAATTGATAAATCTGATAAATGACCTCTTGCATGGCCTCTTGTAAAGCGCAGTGTAGGATGGGTAGATGGGGTCAAATTCTGACTT| |GGAAAAGAGGTACTTGAAGCGGCACTTAATCTCATAAATGCAGCTCCGGTCGGTGAACAGTATAAAGTCTCCCTGTGACTCCACATTGACGCAAAGATCC
Host Sequence
Chromosome
chr1
Cytoband
p36.32
Reference genome
GRCh37/hg19
Start
4580780/4520720 (Hg38)
End
4580780/4520720 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/959930; hsa-mir-101-1/Downstream/1341952;
Nearest TSS
ENST00000473358/Upstream/36345; ENST00000420522/Downstream/31425;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/359108, chr1-CpG: 317/Downstream/133209
Upstream sequence
GAACTTACTTTATTCCCTTTTAAATTTTGCCACCATCCTCAGAgagagtaataattgttactatctcaggggctacagcaaagattaagtaagttagata
Downstream sequence
ctaggcccagtacttagcacaTAAATTCTCAACATGAGCTaaaattcgctgggtgtggtggcacgcacctgtggtcccagctaatcaggaggctgaggtg
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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