Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000975
Fusion event
EBV-MASP2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
103489
Orient
+
Integrated sequence
AGCTGTTTAACACCTTCAAGTTAACACCCGTGGTTGATAATCAGGGGCAGCGTCTCTACGTCAGATACTCGTCAGACACGATCTCTATATTATTGGGCCC| |CTTCACCTATCTGGTGGCAGAGCTTTCACCGGTGGAACTCGTGACAGATGTCTACGCCACCCTAGGCATCGTGGAGATCATCGACGAGCTCTACCGGAGC
Host Sequence
Chromosome
chr1
Cytoband
p36.22
Reference genome
Start
End
11100959/11040902 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/1073444; hsa-mir-101-1/Downstream/988256;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/27714, chr1-CpG: 146/Downstream/18071
Upstream sequence
accaggggcctgggagggatggtgtcaggatgaaaccgttccacctcagatcatcaggcattttctcataaggagcacgcaacctagatcccttgcatct
Downstream sequence
gcagttcacaataaggttcacactcctataagaatctaatgctgctgctgctgtgacaggaagcggagctcaggcggtaatgcttgctcgcccttcgctc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.