Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000976
Fusion event
EBV-ADCY10 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
89832
Orient
-
Integrated sequence
TCTTACCCTGGGTGGCAAAAAGTATGCCAGGAGTAGAACAATAACAAGTGCGATGGCGGTAAACAATGGCACCCTCACCTGCTTAAATGAAACCATGGCA| |ACCACTTCAAAGAGAGCCGACAGGAAGATATTTATTAATATTCCATTAGTAAACGAGGCGTGAAGCAGGCGTGGTTTCAATAACGGGAGTTAGAAATTTA
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
End
167819442/167850204 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/1695406; hsa-mir-1182/Downstream/148456;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/29795, chr1-CpG: 89/Downstream/85585
Upstream sequence
tctgctgccagcttgaatttctcctcagaaaatgggattttgttttctatcacattgtcaggctgcaaactttctgaacttttatgatctccttccctta
Downstream sequence
taaaactgaatgcctttaacagcacccaaataaacttttgaatactttgctgcttagaaatttattctgccaggtaacctaaatcatctcactcaagttc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.