Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000978
Fusion event
EBV-KISS1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
139054
Orient
-
Integrated sequence
CTTTAGTGGGAACTAGTGGGAGTGCTGTGCCTCGGGTACCCCTATCCTATAGGTCCTACCGGAGCTCCTTGTCTTGATAATCCCTGTAAACACACACCAC| |CTAAGAACAAGGCATTGTTAACCTTTGGTGGAACCTAGTGTTAGTGTTGTGCTGTAAATAAGTGTCCAGCGCACCACTAGTCACCAGGTGTCACCGGAGG
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
End
204164637/204195509 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/2192273; hsa-mir-1182/Downstream/1252793;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4804, chr1-CpG: 25/Downstream/61907
Nearest cancer related gene
KISS1(TSG, No orient, 0)
Upstream sequence
gagagtagaatgatagttaccagaggctgggaagggtatgtgcggagcggggaagggagtatggagaggatgcagagaagttagttgggggtggggcagg
Downstream sequence
ggtttaaaaaagaattatttgggtaaagacatacagttagatagaagaataagacccagtgcttgatagcacagtaaggtgacaatgattaaaaataata
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.