Basic Information
VIS ID
TVIS42000979
Fusion event
EBV-MALRD1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93849
Orient
+
Integrated sequence
ACTGCGCTGAATACATAGACCTACTAAAGCACACAAAACATGTCTTAGAAAACTGTTCTGCCATGCAATACAAATAAATTTCTCTTACCTGCGTCTGTTT| |GTGTAGTGAGGTGTTGTGTCCTGTATGGTATTCTACTTTAAAAAGGCCGGCTGACATGGATTACTGGTCTTTTATGAGCCATTGGCATGGGCGGGACAAT
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
19833110/19544181 (Hg38)
End
19833110/19544181 (Hg38)
Orient
+
Location type
Intronic
Target gene
MALRD1
Nearest miRNA
hsa-mir-1265/Upstream/1698988; hsa-mir-107/Downstream/1007789;
Nearest TSS
ENST00000439456/Upstream/55087; ENST00000418367/Downstream/148129;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/833720, chr10-CpG: 140/Downstream/271341
Upstream sequence
GTCTGGAAGGGAAAACTTCCCCAGCCACAGCTGGTGAAGTTAGTGCAGAAGAACATTGCCCCAACCCCACCTGGGGAGGGTGGGAGCAGATAACTGGGCA
Downstream sequence
GGGAGGTAATGGCTGAGAAGCCAGGCACTCTAAGCAGTAAGTAGTCCTCTAGAAAAGCAGTGAAATGGGTTTCATTCTGACAGTGTAGAGTGCAAGTTAG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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