Basic Information
VIS ID
TVIS42000980
Fusion event
EBV-LOC107984026 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93853
Orient
+
Integrated sequence
CGCTGAATACATAGACCTACTAAAGCACACAAAACATGTCTTAGAAAACTGTTCTGCCATGCAATACAAATAAATTTCTCTTACCTGCGTCTGTTTGTGT| |AGTGAGGTGTTGTGTCCTGTATGGTATTCTACTTTAAAAAGGCCGGCTGACATGGATTACTGGTCTTTTATGAGCCATTGGCATGGGCGGGACAATCGCA
Host Sequence
Chromosome
chr10
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
47058594/46525454 (Hg38)
End
47058594/46525454 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
LOC107984026
Nearest miRNA
hsa-mir-1265/Upstream/1361366; hsa-mir-107/Downstream/2460058;
Nearest TSS
ENST00000439456/Upstream/59573; ENST00000512997/Downstream/25290;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/166745, chr10-CpG: 30/Downstream/15752
Upstream sequence
TGCAGGATGGAGTTGATGAGGGCGTTGCCCTCCAGCACAGCTTGTGCTTGGTCCCTTTCACTGGGGGCCCCGATCCTTTTGCATCCTGGTCTTTCTTCCT
Downstream sequence
CTCCCCACTGCAAAGACTTTTCTCCTTCCTCACTTTCCTTTTCTGTCCCTGTCACCAAATAAAAGCACTTGCCCTGGTAAAAACACATTGCAGGTCATGT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate