hsa-mir-223-3p _STAD.png
ZNF365 _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000981
Fusion event
EBV-ZNF365 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
124001
Orient
+
Integrated sequence
ATTTTGATGGCGGCGGAGGTCGTGTACTTGGGATTGGGCATAAACAGGCCCACTGGGAAATAGTAGCTGTACTGCATTCTTCTGTTGAGGGGGTATGGGG| |ACTGAGTGTCATTGTACATCTTTTGCAGGCTTTCCACGGCCACCGCGTGGTTGCCCAGCTTGATGACGGCGGCTGAGATCGGCACCCGGGGCTGATCCTC
Host Sequence
Chromosome
chr10
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
64214812/62455053 (Hg38)
End
64214812/62455053 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10C
Target gene
ZNF365
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-7-5p ; hsa-mir-223-3p
Nearest miRNA
hsa-mir-1265/Upstream/5150494; hsa-mir-107/Downstream/917904;
Nearest TSS
ENST00000439456/Upstream/79509; ENST00000461412/Downstream/65395;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/80392, chr10-CpG: 152/Downstream/349622
Upstream sequence
atcaggtgagaaccaagggtgaatggggagtattgcgggagtattgcaggggaggaggtggggaggggACCCATGGTGAGCCCAGCCCGTGGCagctctg
Downstream sequence
tgatgtgggataagttgggacatctctgagcctcagtgtcttcctctatacagtgagagcaatcccagtatcacatgggtatccagtaggagcataacag
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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