Basic Information
VIS ID
TVIS42000982
Fusion event
EBV-chr10:q23.31 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
118302
Orient
-
Integrated sequence
GAGCCCCACAAACACCAGTGTCCAGAGAGGAAGACCGTAAGATAAAGATGGCTGCCTCTCATCTGGAACGGTGGGAAGCTCAGCAGTTGTTTTTGTGGCA| |TTGGACGTCCCTTTGGAGGACAGCGTGGGGGCCAAGGTGGTAGCGTTGGTAATACGGGTAGTAGCACTGGTGGTGGAGGAGGACCTGGTGGTGACATTGC
Host Sequence
Chromosome
chr10
Cytoband
q23.31
Reference genome
GRCh37/hg19
Start
89885228/88125471 (Hg38)
End
89885228/88125471 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/621517; hsa-mir-107/Downstream/937864;
Nearest TSS
ENST00000439456/Upstream/173272; ENST00000526923/Downstream/457719;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/261143, chr10-CpG: 61/Downstream/457300
Nearby gene
LOC105378416(-3347) ; LOC101929727(+6427) ;
Upstream sequence
ATGTGTGGTGTGAGCTTATATACGTGAAAAATACACTTTTATTTAAAACTaaagtaatacatactcattagtgaagaattggaaaacacagaaaagtaaa
Downstream sequence
aattagaatataaaaaaatgtcttcatagtcccactgttctgactgctaacctggaactagacaatacaagtttgtatcctggtctaccacttactagcc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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