HPSE2 _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000983
Fusion event
EBV-HPSE2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
75693
Orient
-
Integrated sequence
AAGTTGGTCAGGCTGACGTCCACCCCACCCCGGCGCCACCTGCAGGGCTTCACTAGAATACCCTGCATGGCCAGGCCCGACCTGCCAAAGATTGTCGGCC| |TGTGGTGAGGGATAGAAGGGGGGGGCACGGTGAGTGTCACTGAGACGGTCTGATGGGGGAAGAGGGCCAGGTCCTTTGGCAAAGAGACGTCCAGGCCCAC
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
100802823/99043066 (Hg38)
End
100802823/99043066 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
HPSE2
Nearest miRNA
hsa-mir-107/Upstream/118498; hsa-mir-1307/Downstream/1931919;
Nearest TSS
ENST00000439456/Upstream/298995; ENST00000488090/Downstream/192736;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/574991, chr10-CpG: 46/Downstream/189309
Upstream sequence
ATTGTTTTATAATTATAATTATACATGTGTAAAACTGGAAGACATTACATTATTGAGGAAGGAAGGCATTTGTGTTTTGTTTGTTTTTTAAGTCAGGCTT
Downstream sequence
TGTGTTGAACTAttattttttatttatttatttatttagatggagtttcactcttgttgcccaggctggagtgcaatggcacaatcttggctcactgcaa
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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