Basic Information
VIS ID
TVIS42000986
Fusion event
EBV-chr10:q26.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
11645
Orient
-
Integrated sequence
TTTAAAAAAGTAGGTTACACTCATTTTAGGCCAGACTTTATTTGCAGATTAATAATTTATGTGATTCTCCTTCCCTCTAGGACTGAAGAAACAGCCTCCT| |GCACGTGAGCATGTATCTGAAATAATTATTATGTCATAAGTGTAATGATTAGAAAGTCATAAACCCACTTCCCTTTACATGAATCTGGGCACTGAATTTT
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
132870926/131072663 (Hg38)
End
132870926/131072663 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/109995; hsa-mir-202/Downstream/2174848;
Nearest TSS
ENST00000439456/Upstream/633596; ENST00000436942/Downstream/22555;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/286763, chr10-CpG: 20/Downstream/2730
Nearby gene
LOC107984186(-3715) ;
Upstream sequence
CTTTCTCTGGTTACTATTAGACTTTGATTATTGTTTCTGCTGCCTCTATTTCTTCTCTCTCATCTCCCTCCTTAATCCCttctttctttatttatttttt
Downstream sequence
ttgagccagagtcttgctctgttgcccaggctggagtgcagtggtgcaacctctcagctcgctgcaacctccgcctccccggttcaatcaattcttctgc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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