Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000987
Fusion event
EBV-GDPD4 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
7418
Orient
-
Integrated sequence
TCTATCATTAAACGGCATGCAGGAAAAGGACAAGCAGCGAAAATTCACGCCCCCTTGGGAGGTGGCGGCATATGCAAAGGATAGCACTCCCACTCTACTA| |CTGGGTATCATATGCTGACTGTATATGCATGAGGATAGCATATGCTACCCGGATACAGATTAGGATAGCATATACTACCCAGATATAGATTAGGATAGCA
Host Sequence
Chromosome
chr11
Cytoband
q13.5
Reference genome
Start
End
76949460/77238415 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10392/Upstream/1903229; hsa-let-7a-2/Downstream/2163607;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/58475, chr11-CpG: 33/Downstream/173276
Upstream sequence
ggcttggcagccagctgaccaaattcagggaggcaggcgcgtggcctggtcaactggacagacttatggcaaccaggaggagggatcggcttggggtggg
Downstream sequence
agaaattatggattccacattggtcacattcagtttgagatgctgttcagaagctgaagtggagatttccaacagggagttagatgttcaaaagccccag
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.