Basic Information
VIS ID
TVIS42000990
Fusion event
EBV-chr12:q12 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
980
Orient
+
Integrated sequence
GCTAGCGTCACTGATTTTGGGCACACTTAACTTGACTACAATGTTCCTTCTCATGCTCCTATGGACACTTGGTAAGTTTTCCCTTCCTTTAACTCATTAC| |TTGTTCTTTTGTAATCGCAGCTCTAACTTGGCATCTCTTTTACAGTGGTTCTCCTGATTTGCTCTTCGTGCTCTTCATGTCCACTGAGCAAGATCCTTCT
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
45556362/45162579 (Hg38)
End
45556362/45162579 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/2838720; hsa-let-7i/Downstream/2025233;
Nearest TSS
ENST00000382841/Upstream/111480; ENST00000550630/Downstream/53408;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/110976, chr12-CpG: 103/Downstream/53351
Upstream sequence
ACTTTGGGAGGTCCTGGTTGTTATAATTGCTTAAATATTCAATTGAAGATTCTTCCCAAGAACTCAAGGTCTAGGTTATATGACAAGACACATCAGGAAT
Downstream sequence
TAAATTTCTTTTTACTTTAGATAGAATAAAAATTAAAAGTCTTAGTAAATTTGGGTTTAATATAAAACCAGACCTTTTCTAATTATTGCAGGCCACAGTC
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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