TMEM132D _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000993
Fusion event
EBV-TMEM132D integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
114240
Orient
-
Integrated sequence
CTTCTACTGTTTTAACGGCGGTTGAGGTGGTAAAGACGTGGGCCGTGGTCAGATCTGTGCAGGTGACTACAGGGTTACCCCTAATCTCCACAGGCACCGC| |CTCACCCACTGCATCTGAGAATACCCCAAAGTACATGAGAGTCAGGCTGTGTGGCCCCTGGACTGCCTTAGTGAAGAGAACCTCGGGCCTGGCCACGGTG
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
130302404/129817859 (Hg38)
End
130302404/129817859 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
TMEM132D
Nearest miRNA
hsa-let-7i/Upstream/1523681; hsa-mir-6763/Downstream/2764138;
Nearest TSS
ENST00000382841/Upstream/119632; ENST00000536512/Downstream/37085;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/117552, chr12-CpG: 256/Downstream/37279
Upstream sequence
cacattttacagacaagatatctgatgcacagggaagttaatcactatcacctaaatggagatcacctagctggtaagtgctagggctgggatttgagcc
Downstream sequence
ttggtagttcttacaaaagagtccagcaggttctagaccactGCATTAAAGAGAGTGAAATTTCACATTGAACCCAGCCCCATTGGAGCAATTTCATGCT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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