Basic Information
VIS ID
TVIS42000994
Fusion event
EBV-chr13:q12.11 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
114337
Orient
-
Integrated sequence
CGCCTCACCCACTGCATCTGAGAATACCCCAAAGTACATGAGAGTCAGGCTGTGTGGCCCCTGGACTGCCTTAGTGAAGAGAACCTCGGGCCTGGCCACG| |GTGGCTAGGGTTCCATTGATGTAGACGGTCACATAGGTGGGCTTCTTCTTGGGCTTCAGCACAATGAGGGTAACATTCATGTAGGTTTTAGGAGGTCCGG
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
23253983/22679844 (Hg38)
End
23253983/22679844 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4499/Upstream/2245998; hsa-mir-1267/Downstream/1482572;
Nearest TSS
ENST00000623511/Upstream/469559; ENST00000575845/Downstream/236525;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1004228, chr13-CpG: 30/Downstream/16597
Upstream sequence
gacttttgggaaaatataaaattaaggcagaaatcaaaaagttatttgaaatgaaaacagggatacaacattccataatctctgggattcagcaaaagca
Downstream sequence
aagttaagaggaaaggttatagtgctaaacacctacctcaaaaagttagaaagttctcaaattaacaatctaacatcacatatggaagaactggaaaaat
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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