DCLK1 _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000996
Fusion event
EBV-DCLK1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93852
Orient
-
Integrated sequence
GCGCTGAATACATAGACCTACTAAAGCACACAAAACATGTCTTAGAAAACTGTTCTGCCATGCAATACAAATAAATTTCTCTTACCTGCGTCTGTTTGTG| |TAGTGAGGTGTTGTGTCCTGTATGGTATTCTACTTTAAAAAGGCCGGCTGACATGGATTACTGGTCTTTTATGAGCCATTGGCATGGGCGGGACAATCGC
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
36532086/35957949 (Hg38)
End
36532086/35957949 (Hg38)
Orient
-
Location type
Intronic
Target gene
DCLK1
miRNAs that regulate target gene
hsa-mir-137
Nearest miRNA
hsa-mir-2276/Upstream/11795445; hsa-mir-1267/Downstream/3706085;
Nearest TSS
ENST00000623511/Upstream/102088; ENST00000379848/Downstream/173357;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/478967, chr13-CpG: 75/Downstream/172954
Upstream sequence
gtgtgtggtgtgtgtgtgtggtgtgtatatgtgtgtggtgtgtgtgtggtgtgtgtatgtgtgtggtgtgtgtatgtgtgtggtatatatgtgtgtggtg
Downstream sequence
tgtgtggtgtgtgtatgtgcatggtatgtgtggtgtgtgtgtagcgtgtggtgtgtgtgtagtgtgtggtgtgtatgtgtggtgtgtgtatgtgcatggt
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate