DCLK1 _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000997
Fusion event
EBV-DCLK1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
84833
Orient
-
Integrated sequence
AGCCCCGGGCTGGCAGAAGAGGCCCTTGTGTCTTCACCGGTGACCTAGGCATAGAGAGTGATGAGCCCGCTTCGACAGAGCCGGTTCATGATCAGCTACT| |GCCTGCCCCAGGACCTGACCCTCTTGAAATCCAACCACTAACGTCCCCCACCACGTCTCAACTTAGCAGTTCGGCACCAAGCTGCGCACAAACTCCATGG
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
36532166/35958029 (Hg38)
End
36532166/35958029 (Hg38)
Orient
-
Location type
Intronic
Target gene
DCLK1
miRNAs that regulate target gene
hsa-mir-137
Nearest miRNA
hsa-mir-2276/Upstream/11795525; hsa-mir-1267/Downstream/3706005;
Nearest TSS
ENST00000623511/Upstream/102168; ENST00000379848/Downstream/173277;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/479047, chr13-CpG: 75/Downstream/172874
Upstream sequence
GTTTTTCAAACAACAACAATCCCACAAAGCTGACATTTCCAAAATGATTATTAGCGTcaccaccaccactgctataaccatcaccactaccactactacc
Downstream sequence
actactacaaccattaccaccatcactgctataaccaccaccaccaccaccattatcaccatcaccatcacacaccacaactaccaccaccaccaccatc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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