Basic Information
VIS ID
TVIS42000999
Fusion event
EBV-chr13:q21.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
6834
Orient
+
Integrated sequence
CTTCCCAGACTCTGCTTTCTGCCGTCTTCGGTCAAGTACCAGCTGGTGGTCCGCATGTTTTGATCCAAACTTTTGTTTTAGGATTTATGCATCCATTATC| |CCGCAGTTCCACCTAAACGGGGCTTAACGTTGCATCCCAGAAGATGCACGCTTAACCCCGCCTACAACCGTGACGTAGCTGTTTACCAGCATGTATAGAG
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
55822763/55248628 (Hg38)
End
55822763/55248628 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/74080; hsa-mir-1267/Downstream/5951170;
Nearest TSS
ENST00000623511/Upstream/185683; ENST00000377931/Downstream/334896;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2046418, chr13-CpG: 25/Downstream/1892209
Upstream sequence
CCTGATGTTTAATCTAAGGCTCTTTCCAATCAGACAGAGTCCTTTCTATCTGGGTAGTCTCTGCCTCTACTGTTCTCTTTCTTCCTCAAACACTGCTCTC
Downstream sequence
TTTTCTCACTAATCATGATATGTCTATCCCCAGATTTGTTTTTATTTACCCAATTTGtagaggataggagcttagaccatgaaagtcaaacagcctgggt
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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