Basic Information
VIS ID
TVIS42001000
Fusion event
EBV-chr13:q21.31 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
124309
Orient
+
Integrated sequence
GCTCACGGCAGTGACCAGGTTCTCCCCCCGTACCACAAAAGAAGCATAGCTCGAGGGCCCCATAATCTGGTTGTCGGCCTCCTCACCCAGGAAGGTCAAG| |AGCTGGCGCAGAACGTTGTCGGTGACAATAAACACCCCCCCCACTGGCTCTCCCCCCTTGGCGGTCGTGTAGGTACTGACCCCCTTGAGCACGCTCTCCC
Host Sequence
Chromosome
chr13
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
63038156/62464023 (Hg38)
End
63038156/62464023 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/1264143; hsa-mir-1267/Downstream/3502307;
Nearest TSS
ENST00000623511/Upstream/140366; ENST00000618134/Downstream/268157;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2066112, chr13-CpG: 36/Downstream/1347563
Upstream sequence
aggaggacagaatacttccaatctcctactatgaagcctgataccaaaaccacatgaatacactacaacaacaccaaaaccaccagccagttttactgat
Downstream sequence
gatgaacatagatgcaaaactccttaacaaaatactagcaaactgaattaaacaacaaattttttaaaaatcattcattgtgaacaactgggattcattt
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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