Basic Information
VIS ID
TVIS42001001
Fusion event
EBV-chr13:q31.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
130693
Orient
+
Integrated sequence
GGCTAAGGCCTGGGACCTTTGCCATCAGTTCGGTCCATGGGATGGTGTAATGCGAAGCATGCCCCTCTATGTCCAGGTGCAGCTTAACCTCGCTGAGGCT| |GGCAGCCCCCACCTCCCATAGCAACACCAGGCAAAAAACACAGAGCAACTGCATCCTAGTCCCGATTTCCCCTCTCAAAATCAGAGATCACCTTGCTCAG
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
83745568/83171433 (Hg38)
End
83745568/83171433 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/5473317; hsa-mir-1267/Downstream/4447232;
Nearest TSS
ENST00000623511/Upstream/1920995; ENST00000446314/Downstream/710960;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2516123, chr13-CpG: 18/Downstream/708096
Upstream sequence
TAAGAAGCACTGCAGATGTAGAAGAGGGAAAGCTAAAtaattgattggatgtgaggaaaaagtgaaaaggaaaacgcaagactacttgaaggttttgagc
Downstream sequence
ctgagcgatagtgcttccatagagagaaagagacaacattatagaaagaattggtttagggataaaaattatgagtttactgtagatatactgagtttga
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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