VISDB Viral Integration Site DataBase

VIS ID

TVIS42001002

Fusion event

EBV-HS6ST3 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

97541

Orient

+

Integrated sequence

GGGTGACTGTGTGCAGCTTTGACGATGGAGTAGATTTGCCTCCCTGGTTTCCACCTATGGTGGAAGGGGCTGCCGCGGAGGGTGATGACGGAGATGACGG| |AGATGAAGGAGGTGATGGAGATGAGGGTGAGGAAGGGCAGGAGTGATGTAACTTGTTAGGAGACGCCCTCAATCGTATTAAAAGCCGTGTATTCCCCCGC

Chromosome

chr13

Cytoband

q32.1

Reference genome

Start

End

97125038/96472784 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-5589-3p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-574-5p ; hsa-mir-5010-3p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-592 ; hsa-mir-513a-5p ; hsa-mir-8068 ; hsa-mir-6867-5p ; hsa-mir-597-5p ; hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-4445-5p ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-6767-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485

Nearest miRNA

hsa-mir-1297/Upstream/45492; hsa-mir-1267/Downstream/1735740;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/380876, chr13-CpG: 35/Downstream/521356

Upstream sequence

aagcagggcagggcatcgcctcacctgggaagtgcaaggggtcggggaattccctttcctagccaagggaagcaataacagactgtacctggaaaattgg

Downstream sequence

gacactcccaccctaatactgcacttttacaatggtcttagcaaatggcacaccaggagattatatcccacacctggctccgagggtcccacgcccacgg