Basic Information
VIS ID
TVIS42001003
Fusion event
EBV-chr14:q21.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
116350
Orient
-
Integrated sequence
CATCAGGCAGCAAGGGAACACAAAGGAAACCAGGGCCGGGATGTGAGGCCTCAGCGCCCCCTCCTGATCAAAGAGGGCCTCGCTGACCCCGGAGATGACA| |TTCTCATTCAGAAAGTAGTGATAGAGGTGATTGACCACAGTCTTAACCAGGCCCTGGACTTGTTCAGGCTCCCACTTGTCCCGCTGGTCCTGTGTGTCTT
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
43731530/43262327 (Hg38)
End
43731530/43262327 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/6309936; hsa-mir-1185-1/Downstream/4498668;
Nearest TSS
ENST00000550708/Upstream/849754; ENST00000557465/Downstream/1122218;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1655201, chr14-CpG: 22/Downstream/1625142
Upstream sequence
aagtctctggcaaccccacctcatgctttcattgggcaggcgggcactttgcttgatctcctccacactgcttatcttcttccaccgtgcatgtgctaag
Downstream sequence
agaatcaggtcactcccacccaaatactgcgcttttctgacgggcttaaaaaatggcgcaccaggagattataacccgcacctggctcagagggtcctac
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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