VISDB Viral Integration Site DataBase

VIS ID

TVIS42001004

Fusion event

EBV-SYNE2 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

11796

Orient

+

Integrated sequence

GAAAGTCATAAACCCACTTCCCTTTACATGAATCTGGGCACTGAATTTTGGGGTACTTCTAAAGACTAACGTGTTCGATTTCGGGGTCACTTCCCCTTTT| |ATAAGTGTGTGAACAGTGATTTCAGTAAAACCTAAGAGATATTTGGTGTCACTTCCGCATTTTAAGTTTCAGAAAATTTTAAAATTAAAATTGAAATTTC

Chromosome

chr14

Cytoband

q23.2

Reference genome

Start

End

64651119/64184401 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-148b-3p ; hsa-mir-9-5p ; hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-484 ; hsa-let-7b-5p ; hsa-mir-543 ; hsa-mir-376a-5p ; hsa-mir-485-5p

Nearest miRNA

hsa-mir-208a/Upstream/89276; hsa-mir-1185-1/Downstream/601225;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/330593, chr14-CpG: 45/Downstream/109612

Upstream sequence

acaagccgaagcagggcgaggcattgcctcactggggaagcgcaaagggtcagggagttccctttcctagtcaaagaaagtggtgacagacggcacctgg

Downstream sequence

CAGGGCAGTGAGAGTAAAACAGGAGTCTCAACCTTATCCAGTGACTGTACACTTTCCGATTGTCAATATTGTAAGTATTCAAACCAAACTGATTGAAACC