Basic Information
VIS ID
TVIS42001005
Fusion event
EBV-chr14:q32.13 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
99956
Orient
+
Integrated sequence
AGTATTGTGTTCCAGGCAGCACACGAAGCCTGCCTCATCCTTGACCATTAGCCTGGGCATGCGTGAACTGCCAGCGTCCTGAGGCTGCTGCTTTCCTCGG| |ATGCCAAAGAAGACGTTGAGATGCGTGTAGCCCAGAAGCGTGTAGTTCTCGGTGGTGGAGGCGTAGTCCAGGAGGCCGTGAAGGAGAGGCTCGTCTGAGG
Host Sequence
Chromosome
chr14
Cytoband
q32.13
Reference genome
GRCh37/hg19
Start
94986123/94519786 (Hg38)
End
94986123/94519786 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/571484; hsa-mir-1185-1/Downstream/618133;
Nearest TSS
ENST00000550708/Upstream/1942; ENST00000298841/Downstream/41305;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/344475, chr14-CpG: 184/Downstream/248489
Nearby gene
SERPINA12(-1942) ;
Upstream sequence
GCCAGAGAGCCACACTGTATGCATAGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgAACATGGTGAGTGTTAGAGGGGAAAAGGG
Downstream sequence
gtgatgataatagttgtggtgatggaggtggtgatggaggtggtggtgatggtggtgatggagatggtggtggtgatggtgatgataatagttgtggtga
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate