Basic Information
VIS ID
TVIS42001007
Fusion event
EBV-LOC100132154 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
42063
Orient
-
Integrated sequence
TAGCATAGCCTCTAGGTTTCCTTGTAGGTCTGTTTGGGTTTGTTGGTTCACGTGGTGCTAACTTGAATTTTTTGGTTTTCTAGTTCCCTCTTAATTACAT| |TTGTGCCAGATCTTGTAGAGCAAGATGGCCTATTCAACAAGGGAGATACTGTTAGCCCTGTGTATACGGGACAGTCGTGTGCATGGAAATGGTACCCTGC
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
106035779/105569442 (Hg38)
End
106035779/105569442 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC100132154
Nearest miRNA
hsa-mir-1185-1/Upstream/418578; hsa-mir-4507/Downstream/51674;
Nearest TSS
ENST00000550708/Upstream/40818; ENST00000414005/Downstream/18953;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2259, chr14-CpG: 17/Downstream/4649
Upstream sequence
acacacaaaccatataccacacactcacacaacccatacacctatacacactcatacccatataccacatacaaccaatataccacacacacacaaccca
Downstream sequence
acaaactgtataccacacactcacacataacccatacacctatacacacacacccatataccacacacacaACCTGTGCACCTacacacacacatacacc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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