VISDB Viral Integration Site DataBase

VIS ID

TVIS42001008

Fusion event

EBV-ARIH1 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

69867

Orient

-

Integrated sequence

GGCCCTGAGCGCAGCTATGCGCTACAAGCTTAAGAAGTTTGTGAACGGACCCCTGGTCCATCTCCGTGTGGTATACATGTGCTGTTTTGTCTTTACTTTT| |TGTGAATATCTGTTGGTGACATTCATTAAATCCTAACGACCGGAGTCCTGTCTCTTTGTGTTCTTGGGGGACTTGAGTTAGCTGTCTTTCCTCTTATTAC

Chromosome

chr15

Cytoband

q24.1

Reference genome

Start

End

72849542/72557201 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-425-5p ; hsa-mir-17-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-545-3p ; hsa-mir-548e-5p ; hsa-mir-548t-3p ; hsa-mir-548aa ; hsa-mir-4668-5p ; hsa-mir-548ap-3p ; hsa-mir-5584-5p ; hsa-mir-6838-5p ; hsa-mir-6892-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-140-5p ; hsa-mir-1273c ; hsa-mir-4310 ; hsa-mir-4477b ; hsa-mir-4729 ; hsa-mir-6828-5p ; hsa-mir-7157-5p ; hsa-mir-7856-5p ; hsa-mir-640 ; hsa-mir-512-5p ; hsa-mir-299-5p ; hsa-mir-625-5p ; hsa-mir-1275 ; hsa-mir-4271 ; hsa-mir-4665-5p ; hsa-mir-4725-3p ; hsa-mir-6077 ; hsa-mir-6780b-5p ; hsa-mir-4668-3p ; hsa-mir-3175 ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-6510-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4506 ; hsa-mir-4423-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-4766-5p ; hsa-mir-4475 ; hsa-mir-5009-3p ; hsa-mir-510-5p ; hsa-mir-651-3p ; hsa-mir-518f-3p ; hsa-mir-518d-3p ; hsa-mir-518c-3p ; hsa-mir-518b ; hsa-mir-518a-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-583 ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-501-5p ; hsa-mir-6776-3p ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-3143 ; hsa-mir-5003-3p ; hsa-mir-4803

Nearest miRNA

hsa-mir-10393/Upstream/2477733; hsa-mir-11181/Downstream/30016;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/81849, chr15-CpG: 38/Downstream/79591

Upstream sequence

gacatttaggaggaaaagctggcagatagtgattttgaggatgccacaaagtttgttttgcacacatcagaaaaaaaaaaagcaaactaatcaactgcta

Downstream sequence

ttctctagtgattagtggtgttgagcatttttttgtacctgttggctgcgtatatgtcttcttgagaaatgtcttttcatgtactttgccctttttCTTT