Basic Information
VIS ID
TVIS42001010
Fusion event
EBV-chr16:p13.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
78651
Orient
+
Integrated sequence
TCCAGTTGTATTCAAGGTAGGGGAGGTGGTGGTGCTCTCGGGTGCCTTGGAGAATATAACCTTGTGGGTTGTTGTGGTGGCATTGGTAGCCGTTCGTGTG| |ATAATGAGTGTCTTGGGGGCCGTGCCAAGACCCGAGACAGTAATGTCAAATGTCCGATTGCTCGCAAATGCACCAGAAATATTTTCACAACCCGAAGGTG
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2887756/2837755 (Hg38)
End
2887756/2837755 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/305750; hsa-mir-11401/Downstream/647626;
Nearest TSS
ENST00000527434/Upstream/7387; ENST00000577140/Downstream/18178;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/19754, chr16-CpG: 25/Downstream/4823
Nearby gene
ZG16B(-5471) ; PRSS30P(+1818) ;
Upstream sequence
tccattctattccattcaatgatgattgcatttgattccattcaatgattatggctatcgattccactcgttgattccatttgattccgttcgatgatta
Downstream sequence
acaggcacacacaaacacacataaatacacacccacacacagacacatccacacacagacaggcacacaGCCTGGACAGGGGCCTCCTGGATGGGAGTGG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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