Basic Information
VIS ID
TVIS42001011
Fusion event
EBV-chr16:p11.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
136569
Orient
+
Integrated sequence
CCGCGGGCCAGGACCTCATCAGCGTCCCCCGCAACACCTTTATGACACTGCTTCAGACCAACCTGGACAACAAACCGCCGAGGCAGACCCCGCTACCCTA| |CGCGGCCCCGCTGCCCCCCTTTTCCCACCAGGCAATAGCCACCGCGCCTTCCTACGGTCCTGGGGCCGGAGCGGTCGCCCCGGCCGGCGGCTACTTTACC
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
32474007/32462686 (Hg38)
End
32474007/32462686 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/1568701; hsa-mir-11401/Downstream/1700892;
Nearest TSS
ENST00000527434/Upstream/3928; ENST00000568972/Downstream/186507;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/113526, chr16-CpG: 36/Downstream/15782
Upstream sequence
AGAGacacatacagagacgcagacacatacacaaatacacaaacacgtatgtacacacacacacacatgcacataaaagtacacccacacccatccacac
Downstream sequence
attaggggttaggggttaggggttaagtttagggttaggggttggagataggagttggggtcagagttaggggttaggagtcaacgtttagagttagggg
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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