Basic Information
VIS ID
TVIS42001012
Fusion event
EBV-chr16:p11.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
102482
Orient
+
Integrated sequence
GCCCATAACCCAAGAGCTCCACTCCAAGATAAAGAGCCTGAGGGACAGGTGCGTCTGTCGGGAATTGGGGCACGAGAGGACCATCAGGAGTATCGGGACG| |GAATTATATGAGGCAACGAAGGAAATAATAGAGTCGCTCAACTCCACGTTCATCCCCCAGTTTACGGAGGTGACCATCGAGTACCTTCCGAGGAGCGACG
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
34176153/34941782 (Hg38)
End
34176153/34941782 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/778109; hsa-mir-11401/Downstream/15350834;
Nearest TSS
ENST00000527434/Upstream/781746; ENST00000319817/Downstream/38062;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/93043, chr16-CpG: 100/Downstream/32047
Upstream sequence
CCTCACTGCCGTGCAGCCCTAAGACAGTGATCATAATAATCAACATAGTCATAGTCAATACAAATTTAGTAACGAACCtagggttaaggttggtgttagg
Downstream sequence
gggaggaagggagaaaggcaggaagggagaaaaaagaaagCATGAACACaagaaagaaagaaggaaagaaggaaagagagaaagaaagaaagaaagaaag
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate