Basic Information
VIS ID
TVIS42001014
Fusion event
EBV-chr16:q22.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
98140
Orient
-
Integrated sequence
TGGTGCCAACTTAAACAGATACGCATGGCATCGCGGGGGCTAGACCTCTGGCTGGATGAGCACGTGTGGAAGAGGAAACAGGAGATTGGTGTGAAAGGAG| |AAAATCTGCTTCTCCCCGACTTATGGCTAGATTTCCTACAACTCAGCCCCATCTTCCAGCGCAAGCTTGCTGCCGTTATTGCCTGTGTCCGACGCCTGCG
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
69205541/69171638 (Hg38)
End
69205541/69171638 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA16B
Nearest miRNA
hsa-mir-1225/Upstream/938139; hsa-mir-11401/Downstream/394170;
Nearest TSS
ENST00000527434/Upstream/4534; ENST00000524887/Downstream/15491;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/38633, chr16-CpG: 134/Downstream/15339
Nearby gene
UTP4(-2604) ; RNU6-22P(+4034) ;
Upstream sequence
gaaaggaaccatcatcgaatggagtcgaatggaatcatcaatgaatggaatcgaatggaatcATCATAGAAAGGAATCATAGGGAatcattgcaaggaat
Downstream sequence
aaaggaggggagggaatgtgaggggaagggactgtgggagaggggagaggaggggaggggatgtgaggggaagggaagggaagggaaggAAAACCAGTAT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate