VISDB Viral Integration Site DataBase

VIS ID

TVIS42001015

Fusion event

EBV-CDH13 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

45539

Orient

+

Integrated sequence

ATGCTGAACTCGGTTTCTGGTAGGCAGGTGGCAGCACAGGGCGGTGTACAGGCCCCTGCCGACGTCCCCTGGGACATCCTGGGAATCTTTGCAGGTTCTG| |GGTCCAGGGAGGGTAAGAAAAGTGGGGGTGGTTCTGGGCCACATGGACTTGAAGCAGAAGTTGGCCGGGGACTGGCCGGTGAGGATGGATTTCAGAAACT

Chromosome

chr16

Cytoband

q23.3

Reference genome

Start

End

83197963/83164358 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-181a-5p ; hsa-mir-4464 ; hsa-mir-4307 ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-31-3p ; hsa-mir-367-5p ; hsa-mir-1266-3p

Nearest miRNA

hsa-mir-1225/Upstream/475339; hsa-mir-11401/Downstream/343988;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/536150, chr16-CpG: 67/Downstream/643449

Nearest cancer related gene

CDH13(TSG, No orient, 0)

Upstream sequence

TTGGGCCTTGAAATTCTTCCGAAGTAGAAAACTTGGAATACAAATGAAGCAGAAACTGACTAGGGCAAGTTAGAGAAATTGggggaagggaagggagggg

Downstream sequence

ccacacaTGGTGGAGTTAGGTCACAATCCACGTCCCTCTGACTCTTGAAGGAAGCATCATTTATTGAAAAACTAGAGTGTCTAAGCAGGTGATTTTGATT