VISDB Viral Integration Site DataBase

VIS ID

TVIS42001017

Fusion event

EBV-JUP integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

78514

Orient

-

Integrated sequence

CCTGACGTTGTGCCGGCTGGTGTTGGGCTGGTGACATCCGCGGTGGATACAGTGGGGCCTGTGCTTGCAGGTGCGGTGAGGTTGGTAGGCACGTGAGTAG| |AGCTGGGTAGACCTGTCGTTGTATTGGGATCAGCAAATCCAGTTGTATTCAAGGTAGGGGAGGTGGTGGTGCTCTCGGGTGCCTTGGAGAATATAACCTT

Chromosome

chr17

Cytoband

q21.2

Reference genome

Start

End

39755421/41599169 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-615-3p ; hsa-mir-30c-5p

Nearest miRNA

hsa-mir-1180/Upstream/81952; hsa-mir-10226/Downstream/895604;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/50089, chr17-CpG: 20/Downstream/49319

Nearest cancer related gene

JUP(TSG, No orient, 0)

Upstream sequence

tcaatcttcagttttgtgcagggcctagagacctaagagctgtccagcagtatagaatcggggttggtatctagaaatcctattgacatcttaatcctct

Downstream sequence

tagtggtaatggtggtggtgatggtagtgatggtggtagtgataattgtgatggtggtgattatagtgatggtgggggtggtaatggtggtggtgggggt