Basic Information
VIS ID
TVIS42001018
Fusion event
EBV-LINC00469 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
48073
Orient
+
Integrated sequence
TGCGGTCTGTTTTCCCCGCGTTTTCCGATAGAATAGCTGCCTGGATCTGCGACCGGTCCCCTTTCTGCGAAAACACCCGGGCCGTGGCCAGGGGTTACCG| |AGGCCTCGTGAAGAGGTTCTTGGCATTCGTGTTTGAGCGTAGTAGCTATGACCCCCCCTTGTTGAGGCAAAACTCTAGGCCTGTGGAGCGCTGCTTTGCC
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
71767479/73771340 (Hg38)
End
71767479/73771340 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC00469
Nearest miRNA
hsa-mir-10226/Upstream/4671684; hsa-mir-1250/Downstream/977273;
Nearest TSS
ENST00000595228/Upstream/33486; ENST00000584660/Downstream/5417;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/125809, chr17-CpG: 40/Downstream/130491
Upstream sequence
CTGACAGGTCTACTgttctctctgaacttccagtcccactggccttcttttcattaggcaaacacaaccaccccagggcctttgccttttctggtttctc
Downstream sequence
AGTCACGAGGGgagagaaatcactgtaggaagttgggaaatataatttcagtggaggatacagaggcacttatggaagcttcagcaaaagtagacaaacc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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