VISDB Viral Integration Site DataBase

VIS ID

TVIS42001020

Fusion event

EBV-TBC1D16 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

57013

Orient

-

Integrated sequence

CTATCATGCTCAAGGCATCTGCCTCTGGCACTTCCCGGTTAGAGGCCGGGTCGTAGACGATGGCCTGTTCCTGGTAGGTATGTCCGGCTATTCTCGCAAT| |GTTGCTCTCGAGGGGCACAAAGTCCATCTCAGGAGTCTCTATGTCAAAGGTGGTCTGATAGTATTGGCTCCTGGCGGTGTCCAGTGTGATGGGGGACGTG

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

77998157/80024358 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26a-5p ; hsa-mir-4691-5p ; hsa-mir-6792-3p ; hsa-mir-1236-3p ; hsa-mir-150-5p ; hsa-mir-877-3p ; hsa-mir-186-3p ; hsa-mir-6867-5p ; hsa-mir-574-5p ; hsa-mir-933 ; hsa-mir-1250-3p ; hsa-mir-505-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-6872-3p ; hsa-mir-1226-3p ; hsa-mir-553 ; hsa-mir-210-3p ; hsa-mir-4446-5p ; hsa-mir-4666b

Nearest miRNA

hsa-mir-10226/Upstream/317109; hsa-mir-1250/Downstream/74470;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/206, chr17-CpG: 203/Downstream/10919

Upstream sequence

ACTGGAATGTGGTCAAACCAACACTCAACCATAAACATGAGACTCCAAGACACTATGGGGCATTTTTTTGTAGTACCAGCATATGCTTTATGAAGAGTCG

Downstream sequence

aacacacaccacagacacacacaccatacaccatagacacacataccacacacaccatagacacacacactacacatcatagacacacacaccacacaca