Basic Information
VIS ID
TVIS42001021
Fusion event
EBV-IL9RP4 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
130808
Orient
-
Integrated sequence
CCATAGCAACACCAGGCAAAAAACACAGAGCAACTGCATCCTAGTCCCGATTTCCCCTCTCAAAATCAGAGATCACCTTGCTCAGACCAGCCCAATCGAA| |AAACTGAGATCGTATTGCCGGATTCTTCAATGCCTGCATGTAAATCTCCGTCCAGCATCCAGGTAAATCGTCCTGAAACTCTGAGAGGTCCACAAGCACA
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
80948/80948 (Hg38)
End
80948/80948 (Hg38)
Orient
-
Location type
Intronic
Target gene
IL9RP4
Nearest miRNA
hsa-mir-1-2/Downstream/31308;
Nearest TSS
ENST00000575820/Upstream/7403; ENST00000580410/Downstream/77435;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/4921, chr18-CpG: 21/Downstream/31361
Upstream sequence
ttggaaatggcaatatcttcatgtaaaacctacacagaagcattctcagaaacttctttgtgatgtgtgtcctcaactaacagagttgaacctttctttt
Downstream sequence
gaacacacacagacacaaacacacacagacacacacataaacacacacacagacatacacaaacacacacagacacacacacacaaacacacacagacac
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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