VISDB Viral Integration Site DataBase

VIS ID

TVIS42001023

Fusion event

EBV-ST8SIA5 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

37665

Orient

+

Integrated sequence

CCCGCAGACTTAGACGAAAGTTGGGATTACATTTTTGAGACAACAGAATCTCCTAGCTCAGATGAAGATTATGTGGAGGGACCCAGTAAAAGACCTCGCC| |CCTCCATCCAGTAAAAACCCTTGCCCTCTCCAGCAACCAATGTATCCCAAATAAATGTTACTTCTTTTGCTCTTAACCATTGACACGCCTGTCATTCTAT

Chromosome

chr18

Cytoband

q21.1

Reference genome

Start

End

44278053/46698090 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-943 ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-1257 ; hsa-mir-3163 ; hsa-mir-595 ; hsa-mir-4668-3p ; hsa-mir-548az-5p ; hsa-mir-548t-5p

Nearest miRNA

hsa-mir-1-2/Upstream/1727924; hsa-mir-122/Downstream/682406;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/17602, chr18-CpG: 106/Downstream/58130

Upstream sequence

ttggggaaaaaaaaacaataaaaactaactacgacaattaaaaatacaaattaaaaaaccaatacagtgtaactctttacatagggtttacattgtgctg

Downstream sequence

aacaatccaccacaccaacaatcaaaacaacccaacacaccagcaatcaaaccaacccaacaatccaccacaccaacaatcacaacaataatccaataac