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TVIS42001024
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001024
Fusion event
EBV-CD226 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
42037
Orient
+
Integrated sequence
CTTGCCTTCTTCCCTTGTTAACCTGATAGCATAGCCTCTAGGTTTCCTTGTAGGTCTGTTTGGGTTTGTTGGTTCACGTGGTGCTAACTTGAATTTTTTG| |GTTTTCTAGTTCCCTCTTAATTACATTTGTGCCAGATCTTGTAGAGCAAGATGGCCTATTCAACAAGGGAGATACTGTTAGCCCTGTGTATACGGGACAG
Host Sequence
Chromosome
chr18
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
67620230/69952994 (Hg38)
End
67620230/69952994 (Hg38)
Orient
+
Location type
Intronic
Target gene
CD226
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-1277-5p
;
hsa-mir-3924
;
hsa-mir-223-5p
;
hsa-mir-190a-3p
;
hsa-mir-511-3p
;
hsa-mir-380-3p
;
hsa-mir-411-3p
;
hsa-mir-379-3p
;
hsa-mir-4495
;
hsa-mir-5011-5p
;
hsa-mir-6798-3p
;
hsa-mir-6793-3p
;
hsa-mir-323b-3p
;
hsa-mir-4640-3p
;
hsa-mir-5582-3p
;
hsa-mir-548f-3p
;
hsa-mir-548e-3p
;
hsa-mir-548az-3p
;
hsa-mir-548ar-3p
;
hsa-mir-548a-3p
;
hsa-mir-516b-5p
;
hsa-mir-6749-3p
;
hsa-mir-6792-3p
;
hsa-mir-4691-5p
;
hsa-mir-6516-3p
;
hsa-mir-630
;
hsa-mir-6832-3p
;
hsa-mir-4659b-3p
;
hsa-mir-4659a-3p
;
hsa-mir-6875-3p
;
hsa-mir-421
;
hsa-mir-505-3p
;
hsa-mir-7159-5p
;
hsa-mir-676-5p
;
hsa-mir-16-1-3p
;
hsa-mir-4709-5p
;
hsa-mir-212-3p
;
hsa-mir-132-3p
;
hsa-mir-5706
;
hsa-mir-4782-5p
;
hsa-mir-1299
;
hsa-mir-129-5p
;
hsa-mir-8055
;
hsa-mir-744-3p
;
hsa-mir-6864-3p
;
hsa-mir-3672
;
hsa-mir-4423-5p
;
hsa-mir-6501-5p
;
hsa-mir-6880-5p
;
hsa-mir-6745
;
hsa-mir-363-5p
;
hsa-mir-4294
;
hsa-mir-367-5p
;
hsa-mir-1267
;
hsa-mir-6812-3p
;
hsa-mir-6764-5p
;
hsa-mir-1915-3p
;
hsa-mir-2681-5p
;
hsa-mir-511-5p
;
hsa-mir-6830-3p
;
hsa-mir-892a
;
hsa-mir-1227-3p
;
hsa-mir-1827
;
hsa-mir-1910-3p
;
hsa-mir-2467-3p
;
hsa-mir-25-3p
;
hsa-mir-32-5p
;
hsa-mir-3612
;
hsa-mir-363-3p
;
hsa-mir-367-3p
;
hsa-mir-377-5p
;
hsa-mir-4257
;
hsa-mir-4325
;
hsa-mir-4497
;
hsa-mir-4537
;
hsa-mir-4710
;
hsa-mir-4792
;
hsa-mir-5186
;
hsa-mir-550b-2-5p
;
hsa-mir-6086
;
hsa-mir-650
;
hsa-mir-6511a-5p
;
hsa-mir-7703
;
hsa-mir-7855-5p
;
hsa-mir-92a-3p
;
hsa-mir-92b-3p
Nearest miRNA
hsa-mir-1-2/Upstream/2871308; hsa-mir-548av/Downstream/2900327;
Nearest TSS
ENST00000575820/Upstream/5141;
ENST00000578377/Downstream/3676;
Nearest CpG islands
None/Target,
chr18-CpG: 67/Upstream/482982
,
chr18-CpG: 80/Downstream/252291
Upstream sequence
ctaagggaaaatgattttcacctaaaataccaacccaccagactagcaatcaaACCAAcaaccccacaacccaccacaccaacaatcaaaccaacaaccc
Downstream sequence
taagaaccacaatgagaactcactttatatctactaggatggacataatcaaaaagagaaaaattaatatgttagggaaaatgtggagaaattcgaaccc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Sample Information
×
Sample name
GCT015
Sample type
Tumor
Gender
Female
CpG Island Information
×
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