VISDB Viral Integration Site DataBase

VIS ID

TVIS42001026

Fusion event

EBV-EPS15L1 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

166232

Orient

+

Integrated sequence

GCGGGTCCCCCTAGCCCCGGCGGGGATCCGGATGGGTACGATGGCGGAAACAACTCCCAATATCCATCTGCTTCTGGCTCTTCTGGGAACACCCCCACCC| |CACCGAACGATGAGGAACGTGAATCTAATGAAGAGCCCCCACCGCCTTATGAGGACCCATATTGGGGCAATGGCGACCGTCACTCGGACTATCAACCACT

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

16488930/16378119 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-885-3p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-6804-5p ; hsa-mir-185-5p ; hsa-mir-558 ; hsa-mir-1233-3p ; hsa-mir-3192-5p ; hsa-mir-5739 ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-6779-3p ; hsa-mir-3678-3p ; hsa-mir-2467-3p ; hsa-mir-6801-5p ; hsa-mir-4257 ; hsa-mir-759 ; hsa-mir-329-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4803 ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p

Nearest miRNA

hsa-mir-10395/Upstream/928511; hsa-let-7e/Downstream/1903958;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/22293, chr19-CpG: 22/Downstream/39828

Upstream sequence

gcatgcattaggaaattgtcctaatgctctccctcctctttccctcaacctcctgacaggcccctgtgtgtgatgttcccctctctgtgtccatgtttaa

Downstream sequence

atggatggatggatgggcaggtagagacagggaggcgggtgggtggtagacagggaggcagatatgtggcgacgtcttgcaggtaggtaggtaggtaggc