Basic Information
VIS ID
TVIS42001027
Fusion event
EBV-chr19:p12 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
69669
Orient
+
Integrated sequence
ATACCTGCCCCTCTTTCTCTGTGGGGCGATGGCCTCCGGGGGGCTGTACCTGGGCCATTCCAGCATCATTGCATGTGTCATGGCCACCCTCTGCACCCTG| |ACATCTGTTGTGGTATATTTCCTCCATGAAACCCTTGGACCCCTGGGCAAGACCGTGCTGTTTATCTCAATCTTTGTCTATTACTTTAGCGGGGTAGCGG
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
24062912/23880110 (Hg38)
End
24062912/23880110 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/3480756; hsa-let-7e/Downstream/11242590;
Nearest TSS
ENST00000633603/Upstream/5409; ENST00000531821/Downstream/34766;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/116784, chr19-CpG: 32/Downstream/91545
Upstream sequence
gttttaatgcactcagccactaagccttgggttgtttgttaggcaccaaaagccagctgatacagtgactttaacaaaagacttccatgcattcaaatgt
Downstream sequence
agggaaagagaagaaggaggagggaaagaagaagCGGAGGATAGAAGGAGTACTTAGAgaggaggaaaaggtggaggaggatagcagaaggaagagaaaa
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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