Basic Information
VIS ID
TVIS42001030
Fusion event
EBV-chr19:q13.42 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
157025
Orient
-
Integrated sequence
CCCGTGAGTACAGCTCCAGGGAGGCAAAGTCAATGTTCTCGATGAGGGAGGTGTTTAGTGAGATGAAGGTCTGCAGGGTGGCAATGCCGTCCAGCTCGAT| |GGTTTTAAAGTGGTGGTAGTCGTTGTAGACGTGGATCTCGTTGCCGGACTGGAAGTAGTACTGGCTGGTCGCCTGGCACACCTCCGTCATCTTTTTTGTG
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37/hg19
Start
53775186/53271933 (Hg38)
End
53775186/53271933 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/990040; hsa-mir-10394/Downstream/394746;
Nearest TSS
ENST00000633603/Upstream/1001; ENST00000595091/Downstream/19693;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/16620, chr19-CpG: 30/Downstream/19225
Nearby gene
VN1R4(-994) ;
Upstream sequence
agatgaatggatggtgggtgggcagatggatggaatggtagttggatgaatggatagacatatatgtggattaatggacgaatgaatggcgggtgggtgg
Downstream sequence
cacactcatattcaaatacactcacTATGCCCAGCACTCACACAGACTCACACAGTCCCACTGACCTTTAAACACCACACTCGCAGAGTCAGCACACGCA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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