VISDB Viral Integration Site DataBase

VIS ID

TVIS42001031

Fusion event

EBV-HSPBP1 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

118853

Orient

-

Integrated sequence

CTGCCTTGTCTCTGGCGTGTGCCATCGCGTCTGGACGCAGAAGGCCTCCCGGCCTCTTTTATAGCTAGTCTCCACACCCAATACTCTACTGAACCATCAC| |ATACATGACCTCCTCGAGGTATGCAGGGAATGAGCGGTCCGTGAGCCGGTCAACACGACATTGCTTCCGTTTCATGCCTCCAGCTGCCCCTGACCAGTTA

Chromosome

chr19

Cytoband

q13.42

Reference genome

Start

End

55777869/55266501 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-16-5p ; hsa-mir-484 ; hsa-mir-125b-5p ; hsa-mir-92a-3p

Nearest miRNA

hsa-let-7e/Upstream/21251; hsa-mir-10394/Downstream/121680;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/6994, chr19-CpG: 20/Downstream/12979

Upstream sequence

aggagggcgaggagaaGGAAAGGAGTAGGTAACAAAGagaaggagagaagaagaaaagtaggagaaaagaaaatggagaaaggagaataaggaggacagg

Downstream sequence

ccatcaccaccaccaccatcaccaccaccatcatcaccatgacatcaccaacatcaccatcactatcaccatcactatcaccatcaccaccacatcacca