Basic Information
VIS ID
TVIS42001032
Fusion event
EBV-BABAM2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
82929
Orient
-
Integrated sequence
CAGGATGACGAGTTTCCGGATCTACAAGATCCTCCAGATGAGGCCTAAGCAAAGGTGTAGAAGTGTGTCCCCCTCCATTCCACCCACTGATAATACGCCC| |GACAATAAAGTTGATGATATTGAATTCCACACCTGCTTGTGTTTGTGATTTTATTTCATATTCCATGAGAGAGACCTCGCATATTTGCAGAAGGGTCACT
Host Sequence
Chromosome
chr2
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
28417853/28194986 (Hg38)
End
28417853/28194986 (Hg38)
Orient
-
Location type
Intronic
Target gene
BABAM2
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1301/Upstream/198537; hsa-mir-10b/Downstream/4337167;
Nearest TSS
ENST00000437798/Upstream/300366; ENST00000460736/Downstream/115473;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/304089, chr2-CpG: 302/Downstream/195111
Upstream sequence
attcatacactccctccccttttgaaaatcactaataaaaacttgctggttttatggctcaggggtcatcacggaacctactaacatgtgatgtctccct
Downstream sequence
cgcccagccAACATAGACATTTTAAATGGGGATCATATACCAGAGAGAAAATTGTGCTCTAGCAAGAAGACCAGAAATACTTGAATAGAGAGGAACCTCT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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