VISDB Viral Integration Site DataBase

VIS ID

TVIS42001033

Fusion event

EBV-ARHGAP15 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

86911

Orient

-

Integrated sequence

TAAACACCTTCTCTGCCACCGTGTGGACACCACCCCATGCTGGACCAAGAGAGCAAGAAAGATACGCTCGGGAAGCCGAGGTACGCTTCCTTCGTGGTAA| |ATGGCAGAGGCGGTACCGAAGAATCTATGATTTGATAGAACTGTGTGGCTCTCTGCACCACATCTGGCAAAACTTGCTCCAGACCGAGGAGAACCTTTTA

Chromosome

chr2

Cytoband

q22.2

Reference genome

Start

End

143965035/143207466 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-6807-5p ; hsa-mir-4698 ; hsa-mir-586 ; hsa-mir-5700 ; hsa-mir-3662 ; hsa-mir-4764-3p ; hsa-mir-3134 ; hsa-mir-4495 ; hsa-mir-1246 ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-8087 ; hsa-mir-6750-3p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa

Nearest miRNA

hsa-mir-128-1/Upstream/2620781; hsa-mir-10b/Downstream/6122812;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/1076482, chr2-CpG: 111/Downstream/729297

Upstream sequence

atatgagaacagtcaaagaagtctatgaaaaggtccatgcagtgaggaagaaaggtctgtggtaaacactcagcaaagaactgatgcctgctaacagcca

Downstream sequence

CTCTCCCATTGacacacacacacacataaacacacacacacacacacacacacacacaGTGCCATGAGTTCTAAAAACTTTTGGAACTACCAATCAGCTT