Basic Information
VIS ID
TVIS42001034
Fusion event
EBV-chr2:q32.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
167228
Orient
-
Integrated sequence
GGTTTTGGGCTAGCTCTTAGTTTCTGGGTGTGAGAGAGGGATTAAAGTGCTTATGCGCAAAGAATGTGTCAACAACAGGTGTTCCTGCCTCTGCTGGCAT| |GAGTTAGGTGTGGCTTGGGCTGAATCCAAATGTGTATTGGCACAAGATGGAAAGCAAAGTTGCTGGAGTTACTGGGTGGGAGACAGGGATGTATGTGGTC
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
184766550/183901823 (Hg38)
End
184766550/183901823 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/2596171; hsa-mir-1244-1/Downstream/477152;
Nearest TSS
ENST00000437798/Upstream/687504; ENST00000441026/Downstream/2706;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/640968, chr2-CpG: 72/Downstream/696296
Upstream sequence
TATTTTCCTCTGCAATGAGTGAGGAATCTTCCCATCATCACTAAAAACCTGGAAATAGGCTGATAGACAGGAACTCTAGTGTGAGGAGTATTCATTAAGG
Downstream sequence
caacaaactccctgatgctttccctccctgtctgcagtttcaacacaactaaccagtacttctctcttataagaccatcaaccactgagtggttctggca
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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