Basic Information
VIS ID
TVIS42001035
Fusion event
EBV-chr2:q32.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
168677
Orient
+
Integrated sequence
TCTTACCAAGTAAGCACCCGAAGATGAACAGCACAATTCCAAGGAACAATGCCTGTCCGTGCAAATTCCAGAGAGCGATGAGCAGGAGGGTGACTGGGGA| |AAGAGGAGAAAGTGCGTTAGAGAAGGAAGAGTAAGGGAAAGGGGGTGTGGGGCAAAGGGTGTAATACTTACTCATCAGTAGGAGTATACAAAGGGCTCCA
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
194473650/193608926 (Hg38)
End
194473650/193608926 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/4475815; hsa-mir-1244-1/Downstream/13174308;
Nearest TSS
ENST00000437798/Upstream/858959; ENST00000569293/Downstream/289441;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1412840, chr2-CpG: 150/Downstream/2047905
Upstream sequence
AATTAGAAGTTGttttgtttgtttttgttttttgagacagggtattgttctcttgcccaggctcgagtgcagtggtgcaatcttggcttgctgtaacctc
Downstream sequence
caaaaaagaagaaaaaaagaaggaagaaaaaataatgaaataaaagaaGCAAGTAGGGAAATAAAGTTACATATGTAATATTTTGCAGCCTAATTTCATT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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