Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001036
Fusion event
EBV-DYTN integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
11792
Orient
-
Integrated sequence
ATTAGAAAGTCATAAACCCACTTCCCTTTACATGAATCTGGGCACTGAATTTTGGGGTACTTCTAAAGACTAACGTGTTCGATTTCGGGGTCACTTCCCC| |TTTTATAAGTGTGTGAACAGTGATTTCAGTAAAACCTAAGAGATATTTGGTGTCACTTCCGCATTTTAAGTTTCAGAAAATTTTAAAATTAAAATTGAAA
Host Sequence
Chromosome
chr2
Cytoband
q33.3
Reference genome
End
207549466/206684742 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/17551631; hsa-mir-1244-1/Downstream/98492;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/42044, chr2-CpG: 26/Downstream/80412
Upstream sequence
gtatgaccgaattttcttctttattaaggctgtatagtattctattgtgtatatttagcacattttctttaaccattcatctgttgatggacacttaggt
Downstream sequence
TTCCCCATTTTCTTCTTCTTCTTGAGTTTTTTTTCTTAGAAAGTATAGCCTCTTTATTTTCTGCTACTCATCATCAAATACAGGTAGTTATTAATGTCAT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.